Sentence examples for by comparing the alignment from inspiring English sources

We find evidence for this inadequacy by comparing the alignment summary statistics for B6 and CAST liver samples aligned to their respective strain-specific transcriptomes.

In addition, we identified novel candidate genes or exons by comparing the alignment of the Arabidopsis transcriptome and gene predictions to those reads which aligned to unannotated regions of the genome.

Paralogs are ruled out by comparing the alignment and read coverage of cSNPs relative to other SNPs.

Empirical p-values for the SigB HMM alignments were determined by comparing the alignment score to the background scores using a Perl script and R-2.13.0 R-2.13.0

Therefore, the extent of the conformational variability can be evaluated by comparing the alignment tensor of the reporter domain with that of the reference domain.

Rule 7 handles Case 2 by comparing the alignment of the pseudogene and its parent gene with the alignment of the pseudogene and the other pseudogenes on the duplicate segment.

A SNP index largely composed of differences between homeologous loci was created by comparing the alignments of reads from A- and D-genome diploid species (A2 and D5, respectively) to the D5-genome reference.

Fine-scale phylogenies were constructed by comparing the alignments of the core genes of multiple genomes of clade 4 (fig. 3 A) or multiple genomes sharing the same ST, namely, ST7 026), ST58 056), and ST44 015) (fig. 3 B– D) and ST6 005), ST3 001), and ST54 012) (fig. 8).

We evaluate the performance of BWA on simulated data by comparing the BWA alignment with the true alignment from the simulation, as well as on real paired-end data by checking the fraction of reads mapped in consistent pairs and by counting misaligned reads mapped against a hybrid genome.

The significance of the alignment scores was evaluated using Z-scores that were calculated by comparing the observed alignment score to the distribution of scores obtained for alignments after one of the sequences was subjected to 100 random shuffles of its sequence.

The z-score is obtained by comparing the original alignment score of two sequences with an average score obtained form 1000 alignments of randomized sequence of the two original sequences.