Finally, other macronutrient starvation studies, such as for sulfur (S) and phosphorus (P), have allowed for comparative transcriptome analyses.
Mouse ES cells were cultured on feeders in PD03 + LIF, t2iL or t2iL+Gö to produce RNA for comparative transcriptome analyses.
RNA-Seq is being used more and more often as a convenient tool for comparative transcriptome analyses of species with inavailable genome sequences [ 49- 51].
Comparative transcriptome analyses between flowers with different senescence syndromes have been limited by the lack of sequence data in all but a few model species.
For the comparative transcriptome analyses between rice and Arabidopsis, we downloaded Arabidopsis Affymetrix microarray data series GSE5630, GSE5631, GSE5632, GSE5633, GSE6162, GSE6696, GSE12316, GSE17343, and GSE27281.
We also describe comparative transcriptome analyses used to unveil the commonality and diversity of regulatory mechanisms governing leaf senescence in the plant kingdom.
We further carried out comparative transcriptome analyses of primary human AFCs, AFiPSCs, fibroblast-derived iPSCs (FiPSCs) and embryonic stem cells (ESCs).
Mechanistic and functional aspects of cellular reprogramming in general, and of AFCs in particular, can be highlighted on the basis of the presented comparative transcriptome analyses of AFiPSCs, ESCs (H1, H9) and FiPSCs and the corresponding parental cell lines.
Comparative transcriptome analyses demonstrated the connection between gene expression and the biosynthesis of catechins, theanine and caffeine.
Indeed, comparative transcriptome analyses revealed substantial expression differences between human and chimpanzee tissues, in particular in the brain.
As the transcriptome data coverage for human embryos improves, we anticipate that even more precise relationships will be revealed using similar network-based comparative transcriptome analyses.
