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These "suppression regions" were examined by comparative recombination analysis between the inter-subspecific map (Gy 14× PI 183967) and an intra-subspecific map ( C. s. var sativus line 9930× line 9110 Gt).
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For the 130 contigs given similar positions by comparative analysis and linkage analysis 28% of validated positions lay within 1 Mb of an extreme value for population recombination rate.
Interestingly, our previous phylogenetic analysis was supported by this recombination analysis.
Initially the regulated expression of a viral recombinase in immune cells may have been positively selected by its ability to stimulate innate immunity to herpes virus infection rather than V(D J recombination Unlike the "RAG-transposon" hypothesis, the proposed model can be readily tested by comparative functional analysis of herpes virus replication and V(D J recombination.
Here 40% of positions identified by comparative analysis were validated by linkage analysis.
Assigning protein functions by comparative genome analysis: protein phylogenetic profiles.
Weinberg, Z. et al. New classes of self-cleaving ribozymes revealed by comparative genomics analysis.
The halophilic microorganisms from the environmental samples were identified by comparative phylogenetic analysis of their 16S rRNA gene sequences.
Filament-specific genes were highlighted by comparative genomic analysis.
Most of the meiosis-specific genes, especially for those in the meiotic recombination pathways could be identified by comparative analysis of transcriptome profiles of meiocytes, anthers and seedlings [ 6- 8, 55] (Additional file 1, Table S1).
Recombination analysis by Geneconv and DnaSP did not reveal any recombination between any pairs of the marker sequences.
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