Sentence examples for by combining an alignment from inspiring English sources

Despite this potential drawback in the SEN calculation, by combining an alignment based reference structure and relaxing the distance measure to consider only core structure, SEN calculated neutrality better distinguishes structured RNAs from decoy sequences than existing approaches.

By combining an alignment-based with a motif-search-based annotation approach, we doubled the number of annotations throughout all functional categories.

PG in general handles better these difficult to align datasets by combining a local alignment strategy with a more flexible way of assigning motif sites.

We then created a pipeline named XSAnno, which generated a model of orthologs by combining whole genome alignment, local alignment and multiple filters to remove regions with difference in mappability (DIM) between species.

T-Coffee calculates pairwise alignments by combining the direct alignment of the pair with indirect alignments that aligns each sequence of the pair to a third sequence.

By combining sequence alignment with the known structure of PsM2DH and results from site-directed mutagenesis, we have developed a structure/function analysis for the family.

Progressive alignment builds up a final MSA by combining pairwise alignments beginning with the most similar pair and progressing to the most distantly related.

Thus, in this study, a new algorithm for AMPs prediction is proposed by combining the sequence alignment method, Lempel-Ziv (LZ) complexity [ 17], and support vector machines- (SVMs-) pairwise algorithm [ 18, 19].

Therefore, the optimal performance of AMPs predictor can be obtained by combining the sequence alignment and SVM-LZ complexity pairwise algorithm.

In Görnitz et al. (2011), the authors compared the accuracy of transcript inference by combining different read alignment programs (PALMapper, TopHat) with different transcript predictors (margin-based Transcript Identification Method, Cufflinks).

Then, we identify cross-species conserved regions by combining linear-alignment and pattern-discovery (alignment-free) based approaches.