Sentence examples for by clustering the sequences from inspiring English sources

Operational taxonomic unit (OTU -level prOTU -levelsamprofilese alsofprepared by clusamples the sequences into groups having >97% identity.

Redundancy from both the sequence sets was removed by clustering the sequences at 95% identity level, using the CD-HIT program [ 39- 41] version 2007-0103.

The OTU-picking procedure consists in assigning sequences to OTUs by clustering the sequences on the basis of a threshold that the user may modify.

BLSOM recognized phylotype-specific characteristics (e.g., key combinations of oligonucleotide frequencies) in the genomic sequences, by clustering the sequences without adding any prior information regarding the species.

This sorting by decreasing abundance was accomplished by clustering the sequences at 100% homology (every gap and every mismatch counted as a difference) and counting the number of sequences per cluster.

This is a two-stage process: first a guide tree [ 2] is created by clustering the sequences based on some distance or similarity measure, and then the branching structure of the guide tree is used to order the pairwise alignment of sequences.

First, the model states can be assigned to the sequence observations either heuristically, using domain knowledge, or automatically by clustering the sequence observations into N clusters.

Since multiple contigs could result from the same gene owing to either alternative splicing or from errors during sequencing and assembly, we attempted to remove the redundancy that arose from errors by clustering the sequence contigs.

By clustering the unique sequences differing by 3 or less nucleotides, we further reduced the number of sequences to 8,309 OTUs.

As a result of the assessment with CVG, we have derived the most comprehensive transcript sequence set of the Madagascar ground gecko by means of assembling individual libraries followed by clustering the assembled sequences based on their overall similarities.

The maximum-likelihood tree inferred from the poa alignment had a log likelihood of -16392.00 and is shown in Figs. 3, 4, 5, together with the numbers of the taxonomic units obtained by clustering the 427 sequences using the optimal parameter settings.