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The random effects negative binomial model allowed the overdispersion parameter to vary randomly by cluster based on a beta distribution (using the xtnbreg command in Stata) [ 24].
The random effects negative binomial model was used where the overdispersion parameter was allowed to vary randomly by cluster based on a beta distribution (using the xtnbreg command in Stata) [ 19].
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Finally, the expected cluster is generated by clustering, based on the K-Medoids.
The training sets are effectively and evenly chosen in the descriptor space by clustering based on their chemical similarity, and both of the test methods give consistent results with the LOO method.
AM-inducible genes identified by clustering based on global gene expression patterns.
AM- and nodulation-inducible genes identified by clustering based on global gene expression patterns.
Fold changes of expression values were measured and co-expressed genes were identified by clustering based on time-series analysis.
The STRUCTURE analysis on SNP data is supported by clustering based on pairwise distance of the SFP data (Additional File 1, Figure S2.8).
Additionally, the existence of these sublineages has been independently verified by clustering based on spoligotype and MIRU types of strains [ 7, 8].
First, the shotgun sequences were assigned to a fingerprint contig by clustering based on their sequence similarity to BAC and BAC-end sequences.
The Wolbachia origin of these elements was supported by clustering based on the frequency distribution patterns (Supplemental Fig. S1) of tetramer palindromes (72).
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