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However, it was not designed to detect all classes of transposable elements and, because the program works by assembling and identifying potentially repetitive sequences in contigs, it can only identify REs in tandem arrays.
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Bowtie was then used to assemble transcripts by mapping and identifying splice junctions [ 100].
This research identified a large set of mouse genes as switch-like by assembling and analyzing a large collection of microarray data encompassing diverse tissue types.
This can be done by assembling short reads into contigs and identifying protein-coding sequences (CDSs, using approaches comparable to annotating single genomes), or reads can be assigned directly to gene or protein families.
We further validated this program by applying it to comparable GSS from a species with a fully sequenced and assembled genome, Drosophila pseudoobscura, and identifying known elements.
With these goals in mind, Dr. Cooke assembled a team of researchers who helped him develop a viable step-by-step strategy for hunting down and identifying the budgerigar's elusive yellow psittacofulvin gene.
The wDi genome was assembled by first identifying likely wDi contigs in the whole assembly with BLASTn (18) using all Wolbachia genomes from EMBL-Bank, and then collecting all raw reads (and their pairs; n=6,912,659) that mapped to these putative wDi genome fragments.
For their convenience, we have assembled some possibilities from native traditions, and identify them by type.
A sample of non-infected ED control patients was also assembled by identifying adult ED patients without evidence of infection during presentation.
I'm assembling an army of angels to back the initiative and identify stories that need to be told.
It assembles a comprehensive, computerized list of parking tickets issued by a municipality, processes payments and tracks unpaid tickets, and identifies and mails increasingly threatening letters or makes telephone calls to scofflaws.
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