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P.-S.H., K.F., B.H. and D.B. collected and analyzed sequence and structure comparison data.
LW helped to analyze the sequence and structure.
We tackled these problems by analyzing the evolutionary signature in both within-species variation and between species divergence in the sequence and structure of the gene.
They also analyzed sequence family members, respect to folding aptitude and secondary structure prediction.
S.S., J.F.G., T.M.P., B.G., R.D. and M.H. analyzed sequence data.
The sequence and structure of four Mutator-like consensus sequences [ 9] were analyzed in detail in the present study.
In the present study, we investigated the phylogeny and population structure of A. cajennense throughout its distribution range by analyzing three mitochondrial and one nuclear gene sequences.
Bacterial genomes were queried for homologs of sRNAs identified in this study by analyzing a combination of sequence identity, secondary structure conservation, and genomic location as described previously (Raghavan, Groisman, et al. 2011).
The expansion of the database of mimotope sequence motifs can be increased by analyzing structures that bind to HIV directed monoclonal antibody 2G12 and the lectin Concanavalin A (Con A), fostering new mimotope designs.
DBMW analyzed the sequences and determined the structure of the MRP genes.
In this paper we illustrate our method by analyzing a set of tRNA sequences and showing that the correlations our program discovers, in each case, correspond to the known base-pairing and higher order interactions observed in tRNA crystal structures.
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