Sentence examples for by analyzing an alignment from inspiring English sources
We first inferred selection on Sxl associated with its recruitment to the sex determining pathway of Drosophila by analyzing an alignment of Sxl sequences from the Drosophila species, the Tephritidae and M. domestica.
The ROC curve for the phastCons predictions is displayed alongside the BigFoot ROC curves in Figure 3. Comparing the AUC values demonstrates how the increase in predictive accuracy caused by adding more sequence data is less than the corresponding increase caused by analyzing a distribution of alignments instead of a single alignment.
The work demonstrates the utility of this method by analyzing a large multiple alignment (over 65,000 sequences) of P-loop GTPases, focusing particular attention on the Raslike superfamily and in particular on the Arf/Arl/SAR family and G-alpha subunits.
To do so, a sequence logo was created by analyzing a multiple promoter sequence alignment by Weblogo [ 43].
The resulting alignment was analyzed by using Bayesian methods of phylogenetic reconstruction and the GTR+Γ evolutionary model.
By analyzing the alignment rate increase of OPTIMA compared to Gentig, a 1.5 to 2.9 times increase on average, we computed the corresponding cost reduction to be 33 66 %, with an average cost reduction of 54 % for relaxed filtering of data (r) and 49 % for stringent filtering (s).
Nucleotide diversity of Atlantys retrotransposons in different Oryza species was studied by analyzing the alignment of 137 Atlantys RT paralogs.
By analyzing the alignment parameters, two angular distributions (P(θ r ) and P(φ r )), and PDDCS00, we can get a view of the stereodynamical information of the title reaction.
SNVs and small indels that lie within the regions covered by synteny blocks are reported by analyzing the alignment information produced by LAGAN.
Confidence in this classification was acquired by analyzing both our alignment and the crystal structures of these domains.
PICs were calculated by analyzing each final alignment in the Geneious GARLI plugin (version 2.0; Zwickl, 2006); the "info tab" displays variable characters and PICs.
