Sentence examples for by alignment to a from inspiring English sources

The Solexa sequencing of strain SC84 generated 32,016,513 reads with a length of 37 bp, and of strain BM407 generated 1,769,043 reads with a length of 37 bp which were each assembled by alignment to a reference (strain P1/7) sequence using the ssaha2 [12] alignment program.

We further classified Streptococcus and Staphylococcus sequences by alignment to a curated reference database.

Known miRNAs in P. pyrifolia were identified by alignment to a designated part of miRBase17.0.

We collected the set of reporters that were not validated and eliminated by alignment to a RefSeq human gene transcript.

Meta-analysis of multiple QTL mapping experiments by alignment to a common reference map has begun to reveal the genomic organization of trait variation [ 76].

QRNA predictions were filtered by alignment to a variety of coding sequence databases using BLAT [ 40] with a default score cutoff of 30 ([alignment length] – [number of mismatches]) and a minimum sequence identity of 60% (-minIdentity = 60).

The strategy for analysis of the sequencing data was to filter out reads derived from human genes, assemble the remaining reads into contigs, annotate these by alignment to known sequences and perform a phylogenetic classification.

The M. anisopliae MAT1-1 alpha box domain [Pfam: PF04769] was confirmed by alignment to known MAT1-1 sequences and carries a conserved intron [ 22, 23].

Rather than using all-by-all pairwise alignment (Niu et al., 2010) or clustering by alignment to dynamically created contiguous sequence fragments, we cluster individual sequence reads by grouping those reads mapped by Blat (Kent, 2002) alignment to an overlapping region in the reference genome of the host cell.

To ensure the correct annotation, probesets from both microarray platforms, as well as MPSS tags, were mapped by sequence alignment to a human transcriptome (HTR) database that was previously used for a multiple platform comparison study [ 20, 21].

At the beginning of the taxator algorithm in Stage 2, overlapping regions on the query, each defined by local alignment to a nucleotide reference sequence, are merged into larger subsequences called segments (Supplementary Fig. S1).