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The consensus sequence for each gene fragment was determined by alignment of the forward and reverse sequences using BioEdit version 7.0.5.3 (http://www.mbio.ncsu.edu/BioEdit/bioedit.html).html
For HPV type detection, we indexed the multi-fasta HPV reference file using BWA aligner followed by alignment of reads to indexed genome (Li and Durbin, 2009).
Intrinsic anisotropy, caused by alignment of anisotropic mineral crystals (such as clays and micas), is included using an anisotropic background elasticity ( S_{ijkl}^{0} ).
Species-specific primers and a TaqMan® probe were designed by alignment of published ribosomal DNA sequences of the second internal transcribed spacer of cyathostomin and Strongylus spp. nematodes.
The specificity of each primer set was confirmed by alignment of dissociation curves.
One hundred polishing targets were successfully resolved by alignment of the Illumina sequence data.
Individual sections were reconstructed by alignment of images of neighboring parts of the section.
A consensus sequence was previously determined by alignment of the promoter regions of 13 PlcR-controlled genes [11].
Chromatic aberration was verified before image capture by alignment of 15 µm Focal Check Fluorescent Microspheres (Molecular Probes).
A phylogenetic tree was built by alignment of VH and VL amino acid sequences of selected RabMAbs.
Initially, the putative ovine genomic structure was determined by alignment of bovine PITX3 EST and human PITX3 mRNA to the determined ovine genomic sequence using Spidey [51].
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