Sentence examples for by alignment for the from inspiring English sources
Additionally, both for initial candidate identification and for validation by reverse BLAST, sequences were analysed by alignment for the presence of significant sequence similarities, and also were parsed through NCBI CDDB rather than relying solely on e-value cut-offs.
The opposite model would be that our omic profiles are just as stable as our visible phenotypes, and that clustering of any individual samples for any of the three data types would lead to side-by-side alignment for the three samples for each person.
The pipeline (Supplementary Fig. S1) begins by running NextClip, followed by alignment of the output files for the four categories using BWA.
It is worth noting that this factor is significantly increased by the spatial alignment for the consecutive TOF-MRA/PET data, while it remains almost the same for the simultaneous TOF-MRA/PET.
We plotted histograms of pairwise evolutionary distances covered by the pooled 16S rRNA alignment of species represented in the MIC distributions of all three antibiotics and by the entire LTP alignment for the domain Bacteria to assess the range of evolutionary distances covered by our data set in relation to that of all sequenced type strains of bacteria.
We began by retrieving a seed multiple sequence alignment for the transmembrane regions of ABC transporters (including many not classified as CFTRs) from Pfam [ 33].
We will identify the optimal local alignment for the observed sequence by maximizing this joint probability.
A comprehensive multiple alignment for the SLBB superfamily was prepared by combining alignments for individual groups constructed using the T-Coffee program, based on the structural superposition of transcobalamin C-terminal domain (2bbc) and Nqo1 middle domain (2fug; chain S).
For TEI which align to > 3 PacBio reads, the standard deviation of the distances between the predicted breakpoint and that determined by the alignment for each read was plotted against the mean.
Reference genes underwent the same manual checks for sequence correctness by alignment to the reference genome as above (see Additional file 8).
The top 100 genes/probe sets were also manually checked for sequence correctness by alignment to the reference genome (see Additional file 6).
