Sentence examples for by alignment analysis using from inspiring English sources

After direct sequencing (Seqlab, Germany), amplicons were confirmed by alignment analysis, using available sequence information of Perciformes.

These tRNAs have cloverleaf secondary structures that were derived by comparative analysis using an alignment that is most compatible with tRNA phylogenies and known 3-dimensional models of structure [91], [92].

The final alignment is then estimated by Procrustes analysis using all of the matches in the set of best inliers.

Whole genome sequence alignment analysis by using the MUMmer program revealed that extensive genomic rearrangements have taken place between ATCC 33277 and W83 (Fig.  4).

To investigate sequence similarities between L. santarosai serovar Shermani strain LT821 and strain CCF, we examined the conservation of genes in an isolate of L. santarosai serovar Shermani genome and a sequence alignment analysis by using a VectorNTI tool.

We performed our analysis using alignments inferred by phylogeny-aware multiple sequence alignment program Probabilistic Alignment Kit (PRANK) [ 78, 79], which has been reported to outperform other aligners in simulations [ 80].

We conducted a RADICAL analysis using an alignment of 13 cyanobacterial genomes provided by Shi and Falkowski (2008).

Resulting alignments were subject to phylogenetic analysis using MRBAYES [ 78].

Maximum likelihood analysis using traditional primary sequence alignment retained one tree with the assumed model (TVMef+G) selected by AIC.

Multiple sequence alignment analysis was performed using software CLUSTAL × 1.8.

FASTQ files were simultaneously generated and de-multiplexed using the Illumina 'HiSeq Analysis software' v0.9 followed by alignment using Bowtie2 [ 89].