Sentence examples for by aligning their sequences from inspiring English sources

Their gene structures were then manually constructed both by using annotation (if available) and by aligning their sequences with those of other species.

The 826 scaffolds in Freeze 1 were assigned to chromosomes by aligning their sequences with the D. mojavensis genome using MUMmer (Delcher et al. 2003).

Secondary structures for nine octocoral species were reconstructed by aligning their sequences (using Bioedit) [ 25] with homologous structures already published [ 26].

Secondly, helitrons with multiple copies of high similarity are verified by aligning their sequences together to determine their exact 5' and 3' boundaries (Additional file 1, Figure S1B).

Unigenes predicted to be targeted by miRNAs were mapped by aligning their sequences against anchored BACs with the following BLASTn parameters: ≥90% identity and ≥95% coverage.

The boundaries between protein-coding genes of mt genomes of T. canis, T. cati and T. malaysiensis were determined by aligning their sequences and by identifying translation initiation and termination codons with those of A. suum.

The author proposed to search for protein homologies by aligning their sequence graphs (data structures similar to the ones we use in our method).

Proteins with unassigned UniProt IDs were remapped to valid IDs by aligning their sequence to that of proteins in UniProtKB (18) using BLAST (99% identity).

First, we compared membrane and cytosolic proteins by aligning their coding sequences to their start codons and analyzing the fraction of pause codons in each position.

PPR genes were then defined more precisely by aligning their coding sequences with those of the PPR-genes of the Rfo allele.

Putative binding sites can be scored by aligning their nucleotide sequence to the PWM and sum the matching scores over all positions.