Sentence examples for by aligning the sequence from inspiring English sources

The transposon insertion site was determined by aligning the sequence to the F. tularensis SCHU strain genome database (www.Francisella.org).

SNP calling was performed by aligning the sequence reads from each individual to the assembled contigs with Novoalign (version 2.07) [10].

Furthermore, by aligning the sequence reads to the E. coli strain W3110, we screened sequence differences between two E. coli strains using data sets of three different next-generation platforms.

This finding was confirmed by aligning the sequence data with data from other known flaviviruses retrieved from GenBank.

SNVs between isolates were determined by aligning the sequence containing every position where a polymorphism was observed among the isolates.

Comparisons were accomplished by aligning the sequence with the optical maps according to their restriction fragment pattern.

TaqMan® probes and primers specific for the BDV P and BDV L genes were designed by aligning the sequences of known BDV strains.

For the KIBA dataset we downloaded the protein sequences from NCBI and computed the normalized Smith Waterman similarity for each pair by aligning the sequences using the Biostrings R package.

Conventional sequences were assembled and edited in Seqscape v2.5 (Applied Biosystems, USA) with sequence variations identified by aligning the sequences with HXB-2 (Accession number: K03455).

A secondary structure for each input sequence is predicted via RNAfold and a consensus structure is obtained by aligning the sequences using alifold [11].

We further analyzed the MIC17 proteins from both Neospora and Toxoplasma by aligning the sequences, assessing sorting signals, and conducting protein domain searches (Figure S1).