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The functional data of the two sessions of each subject were co-aligned directly (without an intermediate step through anatomical data) by aligning all data to the first functional image of the first scan session.
The final assembly was verified by aligning all data to it and evaluating high quality mismatches inside and outside the aligned regions.
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By aligning all the QTL mapping data from 11 mapping populations, including one diploid and 10 tetraploid interspecific cotton populations, 432 QTLs were anchored to a virtual consensus map by web-based comparison tool cMAP and meta analysis of the QTLs [9].
The spectra exported from DataAnalysis were aligned through in-house software; the data were stored in a matrix by aligning all the peaks within an error of 1 ppm.
We have presented here the most comprehensive quail map to date, obtained by aligning all microsatellite data with the AFLP map and comparing it with the chicken sequence.
The fMRI data for each stimulus condition were first motion corrected by aligning all functional images to the first image, and then coregistered with the T1 anatomical image.
This finding was confirmed by aligning the sequence data with data from other known flaviviruses retrieved from GenBank.
Given that we knew at the outset that the HHL study would coincide with other initiatives such as the Office of the National Coordinator's (ONC) EHR Incentive program, we partnered with the region's Area Health Education Center AHECC) in order to minimize practice burden by aligning our respective data requirements and data standards.
We first validated our RNAPII modification data sets by aligning ChIP-seq data relative to TSSs and transcription end sites (TESs) of the 20% of genes with the highest or lowest expression levels in the genome (3,772 genes/group; Figure 1E).
Assembly and mapping: once sequencing is accomplished, the initial analysis of base calling is performed by proprietary software on the sequencing platform, followed by aligning the data to a known reference genome if available or by de novo assembly; short read lengths can make mapping in the repetitive regions challenging.
Maximum sequence information for annotation was achieved by aligning the EST data with available public cattle transcript sequences contained in the TIGR bovine gene index.
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