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These are separated by a variable region (block II), which is linked to the hcp gene (COG3157).
A typical T. cruzi minicircle is approximately 1.4-kb and contains four conserved sequence regions, each followed by a variable region containing a gRNA.
In Streptococcus thermophilus, a Gram positive species and therefore devoid of lipopolysaccharide, the exocellular polysaccharide biosynthesis cluster is composed of core gene cluster, represented by deoD- epsABCD, and followed by a variable region [ 40].
Both the USP-like subfamily and RD22-like subfamily proteins can be distinguished from other subfamily proteins by a region containing ~30 amino acid residues followed by a variable region.
For the thymidylate synthase (PF02511/COG1351), the phage relatedness patterns were the same as for the tape measure protein, with ΦCP34O and ΦCP13O containing a similar genotype distinct from that of ΦCP9O and ΦCP39O, largely defined by a variable region from residues 93-139.
An archeal sbds locus that includes all or part of the genes encoding the listed functions is surrounded by a variable region (gray arrows), suggesting that clustered genes related to the archeal exosome complex indeed represent a functionally coupled group or even an operon, and that sbds can be a part of this group.
Similar(54)
In addition, AMTN shares several other characteristics with all EMPs, i.e. the signal peptide encoded by exon 2a, the conserved Ser-X-Glu motif (putative phosphorylation site) encoded by exon 2b, and the presence of a variable region encoded by a large exon, as previously observed by Kawasaki and Weiss [ 6].
Characteristically, RIFIN proteins are described as small polypeptides beginning with a putative signal sequence followed by a conserved domain, a variable region and a conserved C-terminal domain.
We chose as inclusion criterion for RIFIN sequences that they correspond to the described rif and RIFIN structures: two exon gene and protein composed of a signal peptide followed by a conserved domain, a variable region and ending with a typical positively charged C-terminus.
The four copies of the T4SS operon diverge by the presence of a variable region between the traG and the trbB genes that include transcriptional regulators mucR and araC, a DNA-binding protein HU-beta, an aldo/keto reductase and hypothetical proteins.
Consensus nematode 18S ribosomal DNA primers were designed by aligning available 18S sequences and identifying a variable region flanked by highly conserved regions.
More suggestions(15)
by a variable distance
by a variable wavelength
by a quasilinear region
by a rectangular region
by a short region
by a variable course
by a variable power
by a variable risk
by a variable capacitor
by a hinge region
by a variable glucose
by a variable group
by a loop region
by a variable amount
by a variable frequency
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