Sentence examples for by a subnetwork from inspiring English sources

By doing this network-based approach, each drug or disease will be represented by a subnetwork where edges represent an interaction and nodes represent the set of seed genes for that particular drug/disease and their direct neighbors.

This is illustrated by those interactions associated with targeting proteins for destruction, using D-box motifs, as well as by a subnetwork of interconnected SLiM-mediated interactions linked to endocytosis.

Interestingly, the global performance metric revealed that the inference performance of C3NET is best for a DAG network followed by a subnetwork of the transcriptional regulatory network of E. coli, whereas the SF network received the lowest F-scores.

Thus, we evaluate the gain by considering a subnetwork composed by the hubs and its interactions.

Development of the proposed framework is achieved by embedding a subnetwork of detailed electrodialysis models within a water network.

We begin our analysis by showing a subnetwork of the transcriptional regulatory network containing all periodic genes.

By applying a subnetwork construction algorithm, we established a subnetwork for CNV genes, as well as for a set of previously reported genes for epilepsy.

This can be done by choosing a subnetwork for which extensive experimental data are available (e.g. the PMC part [ 26]) and parameter estimation is feasible.

There are 34 genes shared by the two N-C subnetworks, including one common hub - APC. FYN, a hub discovered in GSE14323 N-C subnetwork, is also a hub in E-A subnetwork of GSE6467.

Exploring the resulting network displayed by Cytoscape revealed a subnetwork centered around TGF β This subnetwork captured the canonical TGF β signaling molecules (Figure 3).

The real biological networks were obtained by randomly sampling a subnetwork of size 100 from the transcriptional regulatory network of E. coli [ 44, 45] and of yeast [ 46] by using SynTReN [ 47].