Sentence examples for by a multiple sequence from inspiring English sources

The result was validated by a multiple sequence alignment of 341 protein sequences homolog to GCK and extracted from the non redundant sequence database RefSeq, available online [16].

The sea cucumber Ahcy has been well conserved as evidenced by a multiple sequence alignment with other Ahcys from cow, frog and mosquito (Figure 2A).

The position of the turns appears to be evolutionary conserved among different species, as shown by a multiple sequence alignment of seven vertebrate shrew-1 homologues, suggesting a fundamental functional importance of this region (Suppl. Figure S1).

An HMM is based on a probabilistic model, which in a biological context is usually provided by a multiple sequence alignment.

This stretch is highly divergent, indeed absent in some EssB orthologues, as evidenced by a multiple sequence alignment (Supplementary Figure S2 at http://www.biochemj.org/bj/449/bj4490469add.htm).htm

The deduced amino acid sequences of the CCD proteins were aligned by a multiple sequence comparison using the log-expectation (MUSCLE) alignment tool (http://www.ebi.ac.uk/Tools/msa/muscle) with the default parameters [ 19].

Putative gene relationships and sequence data were analyzed by using a multiple sequence alignment created by using Clustal W version 1.82 (18 ).

The kinase gatekeepers were determined by performing a multiple sequence alignment on the kinases using MEGA version 5 [54], using the default parameters (Protein Weight Matrix: Gonnet, Gap Open penalty: 10, Gap Extension penalty: 0.20 and Gap Distances: 5).

The degree of conservation and the phylogenetic relationship between Cif homologs were analysed by constructing a multiple sequence alignment and a phylogenetic tree using the Neighbour-Joining method (Fig. 1).

We conducted sequence-based analyses to identify these amino acid residues by performing a multiple sequence alignment and using the AVANA tool (http://sourceforge.net/projects/avana/) to compare the mutual information between subsets of the alignment for the location of the characteristic sites [17].

By performing a multiple sequence alignment of Barhl proteins, the newly identified medaka Barhl was assigned to the Barhl2 group.