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The bacteria were separated from the phages as described below by a method modified from [16]. 100 µl subsamples from all microcosms were mixed with 5 ml of bacterial culture medium and 0.0056% Virkon (a commercially available disinfectant).
Porphyrin concentrations were determined by a method modified from that of Longas and Poh-Fitzpatrick (1980).
ALP activity was assayed by a method modified from that of Lowry et al. [ 13].
The activity of neutrophil respiratory burst was measured by a method modified from Smith and Weidemann (1993).
DNA from bones or teeth was extracted by a method modified from Catanneo et al. [ 61] as described [ 20].
LPS preparation used 1 mL of cultures adjusted to an OD600 of 0.5 by a method modified from Davis and Goldberg [ 156].
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Bacterial ability to form biofilm was measured by using a method modified from [58].
The Fe3O4/SiO2-OSO3H Fe3O4/SiO2-OSO3H first prepared by a sol–gel method modified inanocatalystusly reported wask [18].
The Fe3O4@chitosan nanocatalyst was first prepared by a sol gel method modified in our previous reports [42].
The constructs were transferred into Agrobacterium by triparental mating [ 68] and transformed into A. thaliana accession Col-0 by a floral dipping method (modified from [ 69]).
These water samples were concentrated by a method slightly modified from Gilgen et al. (22 ).
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