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The difference in likelihood between these two models was compared by a likelihood test [40].
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Regressions of the phylogeny and the microsatellite relative abundance and length were performed with BayesTraits [ 49] using Model A and B, and followed by a log likelihood test, to test for a relationship between phylogeny and microsatellite traits.
The window identified as least likely due to chance, is subsequently evaluated by a maximum likelihood test with a test decision based on a Monte-Carlo simulated P-value [ 5].
We assessed the significance of the difference in test accuracy between studies using direct testing and studies using indirect testing by a likelihood ratio test comparing models with and without covariate terms.
The null hypothesis of no threshold effect is: H 0 : β 0 = β 1, where β0 = β1 is tested by a likelihood ratio test.
Significance was tested by a likelihood ratio test (LRT) comparing the models including dorsal fin redscore and male size with models excluding the factors.
The superiority of model MGD over model MG was tested by a likelihood ratio test, which was calculated as -2ln likelihood for MG) + 2ln likelihood for MGD).
Validity of the proportional odds assumption was tested by a likelihood ratio test comparing models with and without the constraint that the odds ratio corresponding to each covariate was the same at each level of the response.
We assessed the significance of the difference in test performance by a likelihood ratio test comparing models with and without covariate terms for sensitivity and specificity.
We tested this by a likelihood ratio test.
This was tested statistically by a likelihood ratio test comparing this model to that without the interaction term.
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