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It is reasonable to hypothesize that true differentially expressed genes uniquely reported by a differential expression tool are functionally connected to genes in the consensus group.
This finding was also supported by a differential expression analysis of a subset of GmNAC genes [ 34], which are known as transcriptional factors involved in regulation of plant response to drought [ 35– 35].
Additional qRT-PCR were performed on pollen tubes grown in vitro, to assess whether the different mRNA levels detected in the time course analysis might have been influenced by a differential expression at the level of pollen tubes.
The difference in TAP dependency of HLA-DR expression within the total KG-1 blast population might be explained by a differential expression of specific HLA-DR alleles with a high affinity for endogenous peptides.
In this article, we propose a novel metric to determine the number of functionally relevant genes reported by a differential expression tool and present edgeRun, an extension of the edgeR package delivering increased power to detect true positive differences between conditions without sacrificing on the false positive rate.
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We then highlight some advantages of stranded libraries by performing a differential expression analysis between strand specific and non-stranded libraries and note how this procedure can be used to probe the annotation of the genome.
We also compared naiveLu, a simple method for identifying differentially expressed genes by simply applying a differential expression test directly without accounting for sample heterogeneity.
It is thus inviting to speculate that NGF plus Col 1 and UG26 CM may modulate similar downstream pathways to block apoptosis, as suggested by our finding of a differential expression of genes in the "Apoptosis" REACTOME pathway following UG26 CM exposure, and the similar relative decrease in Annexin V staining of ESLAM cells incubated with either of these additives.
In boar epididymis UCAL-P19 showed a differential expression by microarray that could not be clearly confirmed by RT-PCR, certainly due to its low level of expression.
The significance of differential behavior, is captured by the p-values from a differential expression analysis.
The response of all examined groups to provocation by LTA was sufficient, with a differential expression of severely ill patients, a fact that reffects their different immunologic status.
More suggestions(15)
by a differential approach
by a differential magnetometer
by a differential quadrature
by a differential inclusion
by a differential refractometer
by a controversial expression
by a quantificational expression
by a differential copula
by a differential evaporation
by a differential pressure
by a following expression
by a collective expression
by a reduced expression
by a linguistic expression
by a cold expression
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Justyna Jupowicz-Kozak
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