This would help understand the statement that initially "certain secondary structural features were discernible…" We have addressed this point by showing a different orientation of toxin omit map density in Figure 4A.
In silico modeling of LINE-1 DNA in nucleosomes by three models suggests a different orientation bias between CpGs becoming hypo- or hypermethylated.
In order to evaluate the robustness of FlexPepDock ab-initio, we repeated the run from a different orientation, created by perturbation of the rigid-body orientation of the extended peptide by random Gaussian translations and rotations of magnitudes 3 Å and 30°, respectively.
It shows that, while all of the grey cards possess the same color (the vectors are similarly oriented), the blue background has a different color, represented by a vector with a substantially different orientation.
In Figure 4 the structural configurations are sketched to present an overview of the output as signaled by the different orientation sensitive mechanisms of the proposed model.
It should be emphasised that the intensity of the Alq3 bands is not proportional to the amount of Alq3 in the samples, which may be explained by the different orientation of Alq3 in each sample.
Its flexibility is underscored by the different orientation of the two CTDs in the structure relative to the DBD-DNA complex.
Lastly, they hit their collection of rubidium atoms with a beam of circularly polarized light, which is reflected differently by atoms with a different magnetic orientation and can, therefore, reveal the magnetic orientation of the atoms in the sample.
Perhaps most interestingly, the 2C TCR assumes a more diagonal binding orientation on QL9/Ld than on dEV8/Kb or SIYR/Kb, placing the germline-encoded loops over different regions of the MHC α1/α2 helices [ 28] [this is apparent in Figure 4(A) by the different orientations of the dEV8 and QL9 peptides].
Based on spiking neuron models and different receptive field models, hierarchical networks are proposed to process visual stimuli, in which multiple overlapped objects are represented by different orientation bars.
