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This is accomplished by a common reference spectrum followed by a series of interleaved experiments, in which a particular coupling dependent parameter is varied according to the quantitative J-correlation method or using accordion spectroscopy.
Specifically, each condition was normalized by a common reference, of which intensity was measured in arrays with Cy5 channels.
It should be noted that the calculation of PLVs may be influenced by a common reference (Vinck et al., 2011), and we addressed this issue by using bipolar referencing in our thalamic recordings (see also Staudigl et al., 2012).
We have added the following to the manuscript to address this point: "It should be noted that the calculation of PLVs may be influenced by a common reference (Vinck et al. 2011), and we addressed this issue by using bipolar referencing in our thalamic recordings (see also Staudigl et al. 2012).
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Keeping this aim in mind, we standardized the one-color with two-color data by including a common reference sample.
The probability was calculated by adopting a common reference value for the proportion of the tooth sites that become carious.
In this way, we aimed to address the first three issues by providing a common reference for the analysis of organ-specific response and recovery.
In the case of multiple IMS experiments and multiple mappings to the same atlas, one can compare the anatomical interpretations of multiple experiments to each other by using a common reference (atlas) space.
Though other inter-platform normalization methods and clustering methods were tested (z-score, quantile normalization), we found that only by using a common reference sample and transforming single intensity data into a log ratio enabled us to overcome the platform-dependent bias and observe cross-platform cell line-specific clusters.
Meta-analysis of multiple QTL mapping experiments by alignment to a common reference map has begun to reveal the genomic organization of trait variation [ 76].
It is noteworthy that recording of all variants was not conducted by comparison with a common reference sequence, such as the rCRS (revised Cambridge Reference Sequence), but rather by comparing the premutation node with the branch in which that mutation occurred.
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