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All of them have nearly identical signal peptide sequences, but the sequence identity in the mature protein region is often low (31 60%) with the exception of 3FTx 4 and 5 (94% identity).
Sixty-six acido acid residues in chicken CX3CL1 are identical to residues in mammals, but the sequence identity between mammals is, as expected, much higher than that between chickens and mammals.
AcrH also contains a TPR fold with seven helices, but the sequence identity of the aligned region between AcrH and AscG is very low (22.4%).
Molecular modeling at ≥90%% confidence revealed that wild-type ATF6 is identical in sequence with other transcription factors by 45%% at maximum, but the sequence identity is limited to the BRLZ domain (Fig. S3c d).
Smu2025_1660 and Smu2025_1658 are multiple-domain proteins similar to nonribosomal peptide synthetases such as gramicidin or bacitracin, but the sequence identity is lower (~24%) than that of the known peptide synthetases.
Three out of the 4 M. gordonae strains with discrepant identification still had the first distinction as M. gordonae by rpsA, but the sequence identity was lower than 97%, which means the identification might be correct when a more complete in-house database is being developed.
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We used a score depending both on the HHsearch probability (ProbaHHsearch) but also on the sequence identity (PercentIdentity) for closely related sequences.
The noncoding mtDNA sequence between gene fragments was compared between PCR amplicons and found to be highly duplicated and occurring in multiple genomic contexts, similar to that of the coding sequence (fig. 1 B ). Duplicates are also variable in length from one copy to another, but within copies, the sequence identity is typically close to 100%.
We are not aware of any studies examining natural transmission of scrapie from domestic sheep to BHS, but in light of the sequence identity of BHS and domestic ARQ sheep prion proteins, we must consider scrapie a potential risk to BHS.
The GH and IJ loops of HAdV-C5K, HAdV-D26K, HAdV-D37K, and HAdV-D48K demonstrate similar spatial arrangements (though the similarity does not extend to the sequence identity) but differ from the CD46 utilising HAd-B11K and HAdV-B35K.
This is consistent with the threshold used in the prior studies (Overton and Barton, 2006), but we did not reduce the sequence identity between trials from different classes.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com