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However recent report suggests that the IRES activity might not completely depend on the overall structure but on different sequence modules that play important role in the ITAF recruitment [19].
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The algorithm has no explicit dependencies on any one region and should perform well on different sequence types.
If the 5' and 3' ends of a single known transposable element are found on different sequence contigs and both are flanked by the same TSD, one can assume that the two ends belong to the same element.
Moreover, integration of ChIP and EST data allows linking of 'orphan' H3K4me3 peaks to gene models on different genomic scaffolds in cases where promoter and coding regions were placed on different sequence contigs during genome assembly (schematic overview, Figure 3E).
For each exon, there was no statistical difference in the nucleotide accessibility and engaged scores computed from secondary structures predicted based on different sequence lengths of window of analysis (data not shown).
To test the performance of our algorithm on different sequence tag lengths, we generate libraries with 20 bp tags and libraries with 35 bp tags.
These OR-coding sequences obtained in this study have been deposited to the DDBJ/EMBL/NCBI Nucleotide Sequence Database with accession numbers shown in table 2. It is generally known that high-throughput NGS methods are affected by higher error rates than the traditional Sanger sequencing method, depending on different sequence contexts (Moore et al. 2006).
Differences in genome signature between different organisms can be attributed to differences in context-dependent mutation rates generated by the replication-repair system and differences in efficiency of the replication machinery on different sequences.
Therefore, we present in Table 4 the hit rate of the best mode for different values of the quotient q on different sequences and different QP values.
Single copy read prediction was comparable on different sequencing platforms.
First, we performed in silico differential expression analysis on different sequenced tissues.
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