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The RepBase 13.02 library (Jurka et al. 2005) and an in-house collection of LTR retrotransposons isolated in O. sativa were used to search the O. sativa Chr3S pseudomolecule (IRGSP Version 4) for the presence of LTRs (from complete LTR-RTs, solo-LTRs, and LTRs from truncated elements (the latter defined as elements having internal coding domains but lacking of a clear second LTR)).
They show a similar N-terminal structure, but lacking of a C-terminal BCAS3 domain in ATG18d, ATG18e and ATG18f (Fig. 2).
Meanwhile, all members in the ATG18 group show a similar N-terminal structure, but lacking of a C-terminal BCAS3 domain in ATG18d, ATG18e and ATG18f, suggesting the functional divergence of different members in the same class.
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