Sentence examples for built using the programs from inspiring English sources

Relatedness trees were constructed based on chord distances using the neighbor joining algorithm, and a majority rule bootstrap consensus tree was built using the programs NEIGHBOR and CONSENSE in PHYLIP v. 3.65 [64].

Trees were built using the programs 'protml' and 'nucml' for protein and nucleotide sequences respectively [ 26].

A median-joining haplotype network for the same dataset was also built using the program NETWORK.

The remaining parts of the model were manually built using the program O and refined with the program CNS [17], [30].

All models will be built using the program MlwiN.

83.9% of the model was built using the program ARP/wARP [ 37].

Instead genealogical information of Brueelia and the other taxa was extracted from a haplotype network built using the program TCS 1.2 [ 50].

The model was furthermore built using the program COOT (Emsley & Cowtan 2004) and then improved by several cycles of manual rebuilding and refinement using the program REFMAC5 (Murshudov et al. 1997).

The peptide helices were built using the program QUANTA based on primary sequence using the helical angles phi −60 and −50 psi, the side chains were accommodated by using the Karplus rotamer library in order to reduce high-energy interactions that destabilized the model.

Models of the C-terminal domain (amino acid residues 110 228) of the ALRQ, AFRQ, and ALHQ variants of ovine PrP were built using the program MODELLER [ 31] using default parameters based upon the X-ray structure of ovine PrP (PDB code 1TPX) [ 32].

A homology model of AtHNL was built using the program MODELLER 8v1, 39 based on structures of the HNLs from H. brasiliensis (HbHNL, PDB ID: 1QJ4) and M. esculenta (MeHNL, PDB ID: 1DWP) as well as of the salicylic-acid-binding protein from tobacco (PDB ID: 1XKL) as templates.