Sentence examples for built using the crystal from inspiring English sources
The homology model of the wild type alginate lyase (AlyVI) marine bacterium Vibrio sp. protein, was built using the crystal structure of the Family 7 alginate lyase from Sphingomonas sp. A1.
The homology model of the dimeric rat CRYBA3/βA3-crystallin was built using the crystal coordinates of the bovine βB2-crystallin (RCSB file: 1blb.pdb) as the structural template, as previously described.
To guide in the selection of residues for spin labeling, a homology model of BmrCD was built using the crystal structure of AMP-PNP-bound TM287/288 (Hohl et al., 2012) as a template.
The molecular models of the complexes formed by MDL 72527 (N, N-bis(2,3-butadienyl -1,4butanediamine 2,3-butadienyl -1,4butanediamine 2,3-butadienyl -1,4butanediamineture of maize PAO (MPAO) as a template (PDBENSpm: 1B37; [ 27]).
In the structural model of NcLPMO9C built using the crystal structure of NcLPMO9D (PDB 4EIR [ 44]), three asparagine residues exposed at the surface of NcLPMO9C were suggested to be involved in the interaction with oligosaccharides, constituting the +2 subsite [ 30].
Sec61 bound to both the idle and translating ribosome was built using the crystal structure of the archaeal SecY (PDB ID 1RH5; Van den Berg et al., 2004 ) and the low-resolution model of the canine Sec61 bound to the ribosome (PDB IDs 4CG7 and 4CG5; Gogala et al., 2014 ).
Homology models were built using the NaVAB crystal structure (PDB ID: 3RVY) [22] because the NavAB sodium channel is the most closely related ion channel for which a crystal structure has been determined.
A homology model for wild-type Bo AChE was built using the recently published crystal structure of human AChE and used to generate models of 2-PAM and HI-6 bound to the active-sites of GF- and VR-inhibited Bo AChEs before nucleophilic attack.
Homology models of PI3Kα were built using the PI3K δ (2WXL) 25 crystal structure as the template.
The homology model of FSA was built using the automated SWISS-MODEL server, by using the crystal structure of α-amylase PWA [PDB 1MWO] from P. woesei as the template [ 56, 57].
MD simulation model of single-crystal SiC and diamond was built using the periodic boundary conditions along the z direction.
