Sentence examples for built using the ARACNe from inspiring English sources

Transcriptional regulatory networks were built using the ARACNe algorithm [ 15].

Both ligands were built using the Maestro (version 9.3.35) Edit/Build panel.

The graphs were built using R3.0.2.

The model was built using MathSBML [ 77].

The model was built using SWISS-MODEL.

The dot-plots were built using Excel.

A co-transcriptional network was constructed from the microarray data using the ARACNE method [ 11].

A co-transcriptional network was constructed from the microarray data using the ARACNE method, which uses mutual information (MI) to test statistical dependency between expression profiles [ 11].

In this work, we reconstructed CLL regulatory networks using the ARACNE algorithm and used master regulator analysis (MRA) to identify candidate transcription factors that regulate an IGVH mutational status signature.

Thus, we used the gene expression profile signatures in over 900 breast cancer samples available in the TCGA BRCA dataset to reconstruct the genome-wide regulatory networks of breast cancer cells, using the ARACNe [ 30, 36] algorithm.

Using the ARACNe algorithm [ 32] and the 102 hybridizations of Singh et al.[ 30], we identified 88 and 111 putative transcriptional targets of MYC and KLF6 in this cell type, respectively (Fig. 3B).