Sentence examples for built a tree using from inspiring English sources

To clarify the phylogenetic situation of the NF-YA genes identified in the transcriptomes, we built a tree using the maximum likelihood method using only the NF-YA domains.

Though it is theoretically possible to build a tree using all of those sequences, it is simply computationally too costly to do so for high-throughput processing.

The same run parameters were used to build a tree using parsimony for the combined dataset: the most parsimonious tree consisted of 31,405 steps (see Additional file 12), and a 50% majority rule consensus tree was built from 1000 bootstrap replicates.

To compare our results to those previously reported for the genus Poa, we built a phylogenetic tree using a subset of the Australian CDO504 copy A and B sequences (spanning the diversity observed in each), along with other Poa CDO504 sequences obtained from GenBank (see Methods).

To exclude effects of the highly variable exon 2, whose variation was driven by pathogen variation, we first built a phylogenetic tree using the sequences of exons 3 4.

On Bacillariophyta dataset, we first built a phylogenetic tree using MGR package) [ 11].

We built a phylogenetic tree using parsimony criteria to reconstruct the evolutionary relationships among the 58 paralogs of Q-saltans1.

We built a phylogenetic tree using MOLPHY for the eleven groups of representative sequences shown in Figure 1.

To study the evolutionary relationships among the newly discovered NBS-LRR genes, we built a phylogenetic tree using the conserved NB-ARC domain.

For each protein alignment we built a phylogenetic tree using PhyML (LG model, gamma distribution of rates, Guindon et al. 2010).

* - presence of auxiliary catalytic S_TK_X domain To identify the closest homologues among the potential plant SLK-like kinases, we performed multiple alignments of catalytic domains with that of human SLK and built a phylogenetic tree using the neighbour joining method.