Sentence examples for built a phylogeny using from inspiring English sources

In order to test the robustness of the reconstructed trees, we adapted a Jackknife test [ 56, 57] on the GSSs as follows: we randomly kept ninety percent of the GSS blocks (65 blocks out of 72); on this subset we computed a GRIMM matrix and we built a phylogeny using BIONJ; 1000 tests were applied.

We have also used the 18 s rRNA sequences of two land plants and all nine green algal species to built a species phylogeny using RAxML [ 58] with parameters -f a -x 12345 -p 12345 -# 1000 -m GTRGAMMA.

However, because the model evaluation with CoMET requires character values for each tip in the phylogeny, we built a new phylogeny using the nine species for which we determined hydrocarbon profiles and interspecific mating propensities.

The resulting alignment (68,803 bp) was used to build an ML phylogeny using GARLI v2.0 (Zwickl 2006).

We next built a phylogeny with the same protein dataset completed by additional proteins built from translations of EST contigs.

We retrieved the sequences from related transporters in plants (pant1 and pant2) and built a phylogeny.

Touchon et al. built a phylogeny based on 1,878 core genes.

We built another phylogeny using the neighbor-joining algorithm based on the difference between the two homoeologous gene expression levels.

Given the relative short length of the sequences used, the objective of this study was not to build a phylogeny of pancrustaceans using CHH family peptides, but to choose the appropriate phylogeny to infer evolutionary scenarios of the CHH family.

MEGA 3.1 [ 34] was used to build a neighbor-joining phylogeny using pairwise deletion, the Kimura 2-parameter substitution model [ 35] and 5,000 bootstrap replicates.

The new alignment was then used to build a phylogeny in MrBayes v. 3.1.2 [ 48] using two simultaneous runs, each with four chains.