Sentence examples for built a phylogeny based from inspiring English sources

Touchon et al. built a phylogeny based on 1,878 core genes.

A FASTA file was created to run in the Network software [16] to build a phylogeny based on the median-joining method.

We calculated pairwise distances between each of the species' metabolic networks and used the neighbor-joining algorithm [ 99] in PAUP* 4.0 [ 100] to build a phylogeny based on metabolic distance between species (Fig.  2).

To independently validate whether these cacti describe changes in local phylogeny, we used a pipeline [ 21] consisting of MUSCLE [ 22], Gblocks [ 23], and PhyML [ 24] to re-align different genomic sequences segmented into cacti directly, and to build a phylogeny based on all nucleotides, including identical sites.

A phylogeny based on expression levels of the genes from all the accessions was built using the neighbor-joining algorithm, with sum of squared differences for all genes between accessions within a distance matrix.

To compare the neutral mutation rate of different species, we also generated a phylogeny based on fourfold degenerate sites.

In 1915 a phylogeny based on morphological characters was proposed [28].

SplitsTree4 [ 92] was used to build a NJ phylogeny based on uncorrected P distances, and bootstrapping was used in 1000 replicates to build a bootstrap network based on all the alternative splits that had occurred [ 93].

PhyML was used to build a starting phylogeny based on the concatenated protein alignments, using the JTT model and a gamma law discretized in four classes to account for variation in the evolutionary rates.

With mitochondrial sequences from all available chiton mtDNAs, we also built a phylogeny on which we reconstructed the evolution of gene arrangement in this class.

We next built a phylogeny with the same protein dataset completed by additional proteins built from translations of EST contigs.