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New stadia are invariably built a distance away from the city centre so a lack of external facilities are noted by away fans.
For each alignment, we built a distance matrix correcting for multiple substitutions with the Kimura two-parameters model [ 56].
To evaluate the presence of conflicting signals in the data set, and especially in the rice lineage, we built a distance matrix (F84 model) from the concatenation of the individual filtered alignments of the 6,878 putative orthologs.
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In a first step, landmarks interact with each other to build a distance model, mainly based on Round-Trip Times (RTTs) between them.
It computes the shortest paths between all pairs of nodes to build a distance matrix and then applies the classical Multidimensional Scaling (MDS) to this matrix to retain the first two largest eigenvalue and eigenvector to a 2D relative map.
The pairwise Netdis values from Equation 3 are then used to build a distance matrix for all query networks.
We use a fast heuristic which proved effective in practice: build a distance matrix for pairs of taxa and use simple clustering to build the ordering.
Proteins coded by 6 genes showing homology in all 6 groups were used to build a distance tree using the neighbor-joining method [ 57].
To remove redundant motifs, each position frequency matrix was converted to a k-mer frequency vector that was then used to build a distance matrix by the Pearson Correlation distance.
The 'ape' package in the 'R' environment was used to build a distance matrix based on the presence of clusters (as determined by SGH Array, or WGS when array data was not available) using the binary setting [ 41].
The essential intuition is to build a distance-aware index for online distance-based query processing and to eliminate redundant graph traversal as much as possible.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com