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Density modification and automatic model building were performed using AutoRickshaw and ArpWarp63 and refined using phenix.refine64.refine64
Iterative rounds of model building were performed using Coot40, and each round was refined with Phenix41.
Dispersion simulations of buoyant and neutral plume releases within the recirculation cavity behind a cubical building were performed using a commercially available CFD code and the RNG k ε turbulence model.
Initial restrained rigid-body refinement and manual model building were performed using REFMAC5 [43] and COOT [44], respectively.
Iterative cycles of refinement and model building were performed using PHENIX and COOT, respectively.
Sequence alignment and EST contig building were performed using the freely available BioEdit package [ 30].
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In order to assess the predictive performance of the metabolites (and to limit potential overfitting), the model building was performed using five-fold cross-validation to evaluate the stability of the variable selection and model fit.
A post-earthquake fire simulation of a six-story dormitory building is performed using the proposed method.
Geometric modeling of a model free-form building was performed using a parametric design method with Rhinoceros.
In this investigation, the simulation of the wind flow around an isolated building is performed using various types of RANS turbulence models in the open source code OpenFOAM, and the results are compared with benchmark experimental data.
The MLR-GA based model building was performed using the MobyDigs [55] computer program.
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