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Among these differences are not only the previously mentioned genome build identifiers (dbkey), but also chromosome names and coordinate systems.
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These would include 'purpose built' identifiers, such as hospital numbers, but also identifiers comprising high-cardinality combinations of personal data (surname, forename, home telephone number), or (surname, forename, date of birth).
Figure 1 Illustration of a peer-tree built on identifiers of 8 mobile wireless hosts.
The correspondence between genes represented by Stanford cDNA microarrays and Rosetta/NKI oligonucleotide microarrays were established by using Unigene identifiers (build 158, release date 18 January 2003 for the wound signature, as this was the original mapping carried out for the validation of the wound signature [ 26]).
As a convention in Galaxy, sequences are named according to the source species genome build and sequence identifier within that build (generally a chromosome or contig); the genome build and sequence identifier are separated by a period.
Then, platform-specific clone identifiers were converted (using Source and other utilities) to UNIGENE cluster identifiers (unigene build 219, June 2009).
As shown in Heyne et al. (2012) we can use these identifiers to build feature indices and represent graphs as vectors in a very high-dimensional vector space.
Another approach is to build a dedicated language identifier which runs separately before any other processing steps take place.
This analysis was strongly dependent of a good match between HIV diagnosis data and laboratory data through identifiers built on patients' date of birth and initials.
The homology model of 3D6 Fv was built using pdb identifiers 1CR9 VL and 1OPG VH, respectively, (overall VL identity = 94% and VH identity = 72%) using QUANTA (Release dated 1999, Accelrys Software Inc., San Diego, CA, USA).
Each TA is numbered uniquely (e.g. TA279_62688) in which 279 represents a unique identifier within a specific TA build and the 62688 is the NCBI taxon identifier for the species (e.g. Blumeria graminis f. sp. hordei from NCBI Taxonomy).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com