Sentence examples for build an initial model from inspiring English sources

Phenix.autobuild was used to build an initial model of DC-LAMP but succeeded only in building parts of one of the two molecules in the asymmetric unit.

AutoBuild46 was used to build an initial model of Pfs48/45 6C, followed by manual building in Coot47.

The AutoSol Program56,57 and the AutoBuild Program58 from the PHENIX software suit59 were used to define the selenium heavy metal-atom sites using a SeMet-DtHNL1 SAD data set, as well as to build an initial model.

After performing 2D classification in RELION-2, the best-looking 2D class averages, as judged by visual inspection, were selected to build an initial model in EMAN2 (ref. 15) using the common-line approach.

This yielded a readily interpretable electron density map which was used to build an initial model of the protein with program O [37].

Following density modification with DM [19], Arp/Warp [20] was used to build an initial model with ∼150 of 253 residues automatically positioned.

The structure was solved using the SAD approach with the data collected from the crystal soaked in iodide, and the AutoSol wizard as implemented in PHENIX (Adams et al., 2010), which also built an initial model.

"Companies that can build an initial knowledge model and launch an initial intelligent service or product, then use this first product to capture new data and improve the knowledge model on a continuing basis, will quickly create clear class-leading products and services that competitors will struggle to keep up with".

The data from this experiment was used to build an initial Kriging model of the concentration and pH dependence of PYK activity.

We build an initial putative model based on the current mechanistic understanding of the studied biological process and the working hypotheses we would like to evaluate.

DOI: http://dx.doi.org/10.7554/eLife.03035.004 In order to build an initial structural model of YidC, we predicted contacts between pairs of residues based on covariation analysis (Marks et al., 2011; Hopf et al., 2012).