Sentence examples for build an alignment from inspiring English sources

Then, the sequences that are homologous with the query sequence are used to build an alignment.

Both MI-GRAAL and GHOST use a seed-and-extend strategy to build an alignment.

The SeqAn library provided functions to build an alignment graph from pairwise alignments.

The –add option adopts a standard progressive alignment method (Feng and Doolittle, 1987; Higgins and Sharp, 1988) to build an alignment using a guide tree, except for nodes where the existing alignment should be preserved.

Another simple method involving less computing time is to build an alignment model only for a few plant species, including A. thaliana and O. sativa, and re-align the new family members.

After above filtration, for methylcytosine (mC) detection, we transformed each aligned read and the two strands of the Nipponbare genome back to their original forms to build an alignment between the original forms.

mugsyWGA first builds an alignment graph using the refinement approach described in SeqAn::T-Coffee (Rausch et al., 2008), with the addition that the orientation of the alignment between segments is also saved.

Finally, the most flexible and widely used way of building descriptors for TF binding is to align the available sites, and to build an (ungapped) alignment 'profile' with the count or the frequency with which each nucleotide appears at each position in the sites.

The former uses torsion-angle states as a replacement of simple three-state secondary structures to build an iterated alignment hidden Markov model [18].

From these pairwise alignments we build a multiple alignment and generated alternative motif candidate sets by three different motif discovery strategies.

We use TM-align (Zhang and Skolnick, 2005b) to build a reference alignment for a protein pair in SALIGN.