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Following our effort to revise sponge classification as we construct new molecular phylogenies [35], we followed the principles of phylogenetic nomenclature under the rules of the PhyloCode v.4c (http://www.ohiou.edu/PhyloCode/) to build a phylogenetic classification based on our results.
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The multiple alignment was used to build a phylogenetic tree.
The obtained sequences were used to build a phylogenetic tree.
These were aligned and used to build a phylogenetic tree of sequence relationships (fig. 4).
These were used to build a phylogenetic tree using maximum likelihood methods (fig. 4).
RT-like sequences from Ty3- gypsy elements (508 elements) were isolated and used to build a phylogenetic tree.
Conserved and variable regions provide the basis for a phylogenetic classification and serve as targets for in situ identification.
The traditional term pisces (also ichthyes) is considered a typological, but not a phylogenetic classification.
We built a phylogenetic tree from a multiple sequence alignment of the 71 Rup family members.
We built a phylogenetic tree with a data set excluding blocks containing duplicated synteny anchors.
First, we built a phylogenetic tree with full length PAD proteins (from NCBI NR protein database).
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