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In a first step, landmarks interact with each other to build a distance model, mainly based on Round-Trip Times (RTTs) between them.
It computes the shortest paths between all pairs of nodes to build a distance matrix and then applies the classical Multidimensional Scaling (MDS) to this matrix to retain the first two largest eigenvalue and eigenvector to a 2D relative map.
The pairwise Netdis values from Equation 3 are then used to build a distance matrix for all query networks.
We use a fast heuristic which proved effective in practice: build a distance matrix for pairs of taxa and use simple clustering to build the ordering.
Proteins coded by 6 genes showing homology in all 6 groups were used to build a distance tree using the neighbor-joining method [ 57].
To remove redundant motifs, each position frequency matrix was converted to a k-mer frequency vector that was then used to build a distance matrix by the Pearson Correlation distance.
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The essential intuition is to build a distance-aware index for online distance-based query processing and to eliminate redundant graph traversal as much as possible.
New stadia are invariably built a distance away from the city centre so a lack of external facilities are noted by away fans.
For each alignment, we built a distance matrix correcting for multiple substitutions with the Kimura two-parameters model [ 56].
To evaluate the presence of conflicting signals in the data set, and especially in the rice lineage, we built a distance matrix (F84 model) from the concatenation of the individual filtered alignments of the 6,878 putative orthologs.
Since the large amount of error inherited from orientation estimation leads to poor traveling distance calculation when driving, we build a moving distance prediction model by training the distance estimation model through linear regression to minimize the accumulated error.
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