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After antigen retrieval in citrate buffer, staining was performed using the BenchMark automated staining system (Ventana Medical System, Tucson, AZ, USA) with primary antibodies against ER-α (SP1, dilution 1∶500), PR (1E2, dilution 1∶500), Ki67 (30-9, dilution 1∶500), c-ErbB2 (4B5, dilution 1∶500), α-enolase affinity purified monoclonal antibodies (mAbs) (ENO-19/8 and ENO-276/3 ENO-276/3l).
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After incubation in blocking buffer, antibody staining was performed as per standard procedures.
For detection of GFAP, PFA-fixed and paraffin-embedded CNS sections were incubated with Dako polyclonal rabbit anti-GFAP antibodies (Z0034; 1 13000) in Ventana buffer and staining was performed on a Ventana NexES IHC Slide Stainer using iVIEW DAB Detection Kit (Ventana).
Cells were washed again with Perm/Wash buffer, and intracellular staining was performed using antibodies against CCL4, IL-2, TNF-α, and IFN-γ.
Slides were rinsed three times in wash buffer and subsequent staining was performed at room temperature using a DAKO Autostainer (Carpinteria, CA, USA).
After heat-induced antigen retrieval in 0.01 M citrate buffer (pH6), immunohistochemical staining was performed with antibodies against desmin (Abcam, 1 500), myosin heavy chain slow (Abcam, 1 100), active caspase 3 (Dako, 1 500), CD3 (Dako, 1 250), CD20 (Dako, 1 50) and CD45 (Dako, 1 100).
Postfixation staining of membrane lipids was performed in 1% OsO4 that had been dissolved in 0.1 M sodium cacodylate buffer containing 8% sucrose, staining was performed for 2 hours at room temperature.
Sections were deparaffinized and heated for 20 min at 95°C for antigen retrieval in Tris-EDTA buffer pH 9. TUNEL staining was performed using In Situ Cell Death Detection Kit (Roche, Germany).
Samples were washed twice with 0.1 M sodium cacodylate buffer (pH 7.2) and in-block staining was performed for 16 h with 0.5% uranyl acetate at 4°C.
Intracellular staining was performed with commercial buffers (Cytofix, BD Biosciences; Perm buffer III) for rat CD2, TCR β, phospho-ERK and FoxP3 detection.
Intracellular staining was performed with the eBioscience-staining-buffer-set according to the eBioscience protocol.
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