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RBCs were lysed with ammonium chloride buffer prior to staining.
For intracellular staining cells were fixed with 1% formaldehyde for 10 min and subsequently permeabilized with 0.5% saponin in 1% BSA FACS buffer, prior to staining with anti-TLR 9, TLR 3 or IL-12 antibody.
For peripheral blood analysis, tailvein blood was collected and RBCs were lysed with ammonium chloride buffer prior to staining for flow cytometry.
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Colon tissue was removed, dissected longitudinally, flushed with phosphate-buffered saline (PBS), fixed in 10% (v/v) neutral buffered formalin prior to staining with hematoxylin and eosin (H&E).
For antigen retrieval, sections were heated in a pressure cooker in 10-mM citrate buffer (pH 6.0) prior to staining.
Horizontal sections (40 µm) through the hippocampus were cut from a dry ice-cooled block on a sliding microtome (Leica, Deerfield, IL) and stored in 0.1 M phosphate buffer (pH 7.4) prior to staining.
Cells were then either taken for staining or permeabilized using a Cytofix/Cytoperm buffer solution (BD Biosciences, San Jose, CA, USA) prior to staining.
Antibodies were diluted 1 20 with Flow Cytometry Staining Buffer (BD Biosciences, Cat. No. 00-4222-26) prior to staining.
For immunohistochemistry, all sections were, fixed in acetone and methanol (1 1) or 4% paraformaldehyde (for MyoD), and subsequently blocked in buffer (3% fetal calf serum in PBS) prior to staining.
Briefly, tissues were washed in phosphate buffered saline and incubated in blocking buffer (1% BSA, 0.3% Triton X-100, 1 mM CaCl2) prior to staining with antibodies to BrdU[ 23] (a gift from Dr. Jeffrey Gordon, Washington University School of Medicine, St . Louis MO; 1 1000) and detected with fluorescent secondary antibodies.
Prior to staining, 220 μl 1 × MES buffer containing 2 mg/ml acetylated BSA and 2 μg/ml biotinylated anti-streptavidin antibody (Vector) was applied onto the array for 30 min at 40°C.
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