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Extracts were boiled with sample buffer and ran on 8 or 12% SDS-PAGE gels.
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The cells were harvested, washed with PBS time times, lysed in 1× SDS protein loading buffer, and run on SDS-PAGE for biotin detection.
The precipitated DNA was dissolved in Tris EDTA (TE) buffer and run on to 1.2% agarose gel stained with ethidium bromide for analysis.
Beads were washed in lysing buffer, boiled in loading buffer and run on SDS-PAGE.
Samples were resuspended in 300 µl of staining buffer and run on a BD LSRII Flow Cytometer using BD FACSDiva Software v6.
Whole cell lysates where boiled in SDS loading buffer and run on NuPAGE 4 12% precast Bis-Tris gels (Invitrogen).
The agarose beads were washed twice with 1X IP buffer, boiled in sample treatment buffer, and run on SDS-polyacrylamide gel electrophoresis on an 8% gel.
The proteins were eluted from the beads by heating for 5 minute at 100°C with reducing loading buffer and run on an SDS PAGE.
Labeled RNAs were precipitated before mixing with the desired amount of protein in binding buffer and run on 4% native polyacrylamide gels as described previously [25].
The samples were boiled for 5 minutes in 4X non-reducing sample buffer and run on a 10% polyacrylamide gel containing gelatin (4 mg/ml) [21], [22].
Purified virions (3 ug as determined using BioRad DC protein assay) were mixed with SDS-PAGE buffer and run on a 12% SDS-PAGE gel and the gels were blotted on nitrocellulose.
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