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Briefly, purified VLPs resuspended in endotoxin free PBS were lysed by resuspending them in equal amount of 2x SDS protein-loading buffer and loaded into a 12% SDS-polyacrylamide gel with a 4% stacking gel.
The samples were dried in a speed-vac to remove the TEA and the samples resuspended in 1X sample buffer and loaded into a single well of 11 or 15% SDS-PAGE gels.
Aliquots of whole blood were added to 96-well micro-titer plates containing the appropriate antibody-dye combinations for each assay, incubated in the dark at room temperature for 20 minutes, diluted with an appropriate buffer and loaded into Flex32™ capillary arrays (PPD) and analyzed with SurroScan™.
Samples were then boiled in Laemmli sample buffer and loaded into an Any kD Mini-protean TGX gel (Bio Rad).
The samples were supplemented with 6.25 μL of 5× gel loading buffer and loaded into a native 2% agarose gel.
Long-term storage mixes were diluted to the required concentration and volume with the provided dilution buffer and loaded into 96-well plates.
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Then, 2.25 µl of pre-amplified cDNA was mixed with 2.5 µl of 2× Universal Master Mix (Applied Biosystems) and 0.25 µl of sample loading buffer (Fluidigm Corporation) and loaded into the sample inlets of the 96 × 96 Dynamic Array (Fluidigm Corporation).
Finally the antibody coupled beads were resuspended in 0.02% NaN3, 20 mM Tris buffer, pH 7.5 and loaded into a column following washing by centrifugation 10,000 × g for 30 s with 20 mM Tris buffer, pH 7.5.
Bio-Rad Polypeptide SDS-PAGE Molecular Weight Standard was prepared in the same loading buffer with DTT and loaded into the gel to provide a molecular weight standard.
Then, for every prepared library (single tube for the 8 kb library or pool of the two tubes for the 20 kb library), 12 μL of library and 4 μL of Fuel Mix (Genomic DNA Sequencing Kit) were added to 136 L of EP Buffer (Genomic DNA Sequencing Kit) and loaded into the sample loading port of the MinION® Flow Cell.
The samples were supplemented with 3.75 μL of 5× gel loading buffer (50% glycerol with bromophenol blue and xylene cyanol tracking dyes) and loaded into a native 2% agarose gel, prepared with 1× LB buffer (Faster Better Media).
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