Sentence examples for browsing the genome from inspiring English sources
MochiView provides tools for browsing the genome by sequence or by data set.
The data visualization also allows browsing the genome by shifting the regions left or right and zooming in and out.
Within this region, a total of 58 genes were predicted by browsing the Genome Database for Rosaceae (GDR) (Additional file 6), most of which from the upstream region closer to the UDMdSSR_025 marker.
Both provide a graphical interface for browsing the genomes of a large number of species, displaying the location of genes, polymorphisms, repeats and regulatory regions.
The other approach was to browse the genome for STRs using the December 12, 2000 version of the genomic sequence at University of California – Santa Cruz [ 36].
The storage of CRISPR sites and their off-target scores allows users to rapidly browse the genome and alter filter criteria to select CRISPRs.
After the annotation is complete the user can choose to download the annotated genome in a variety of export formats (e.g. GenBank, FASTA, GFF3, Excel) or browse the genome in the comparative environment of the SEED-Viewer without having the data actually installed in the SEED.
Besides producing initial assignments of gene function and a metabolic reconstruction, the RAST server provides an environment for browsing the annotated genome and comparing it to the hundreds of genomes maintained within the SEED [ 9] integration.
Last, we analyzed the promoter region of miR-639 by browsing the UCSC genome database (GRCh37/hg19 assembly) and found an E2F1 binding site in the promoter region according to the ENCODE ChIP-seq data.
Some specific copies of genes (PAL, CHS, IFS, F3H) in the phenylpropanoid pathway were near or falling into these quantitative trait loci by browsing the reference genome sequence of Williams 82 (http://www.phytozome.net/soybean).net/soybean
The web interface of Cildb comprises three tools, BioMart for complex queries, BLAST for sequence homology searches and GBrowse for browsing the human genome in relation to OMIM information for human diseases.
