Sentence examples for browser alignment from inspiring English sources

To validate variant calls where the N16961* sequence differs from the corresponding reference, we examined the positions corresponding to those differences, using the Microbial Genome Browser alignment.

Since the Microbial Genome Browser alignment track was not available for the O395 sequence, we used BLAST to examine the corresponding bases in related strains for positions at which the O395* sequence differed from the Sanger-sequenced O395 reference.

I obtained homologous regions for each regulatory region from the UCSC genome-browser alignments [ 46].

I tried JSAV in a few browsers including Opera, Chrome and Konqueror and in all browsers the alignment was well displayed.

We downloaded from UCSC genome browser multiple alignments of 45 vertebrate genomes with Human that includes amino acid alignment from hg19/GRCh37 RefSeq genes (http://hgdownload.soe.ucsc.edu/goldenPath/hg19/multiz46way/alignments/refGene.exonAA.fa.gz) [ 21].

Precomputed protein and DNA alignments can be downloaded or viewed online using either Jalview (Clamp et al., 2004) or a browser-based alignment viewer.

Zebrafish homologs of human 16p11.2 genes were identified using UniGene, Ensembl and UCSC Genome browsers with alignment and family tree comparisons.

Human-specific Alu insertions were characterized by identifying Alu sequences present in the human genome but absent from the orthologous region of the chimpanzee and orangutan genomes in the UCSC genome browser chained alignments (Kent et al. 2002).

The alignment browser of Mega 4 was used as the basic tool for sequence editing [ 68].

GenomeView is a dynamic short read and whole genome alignment browser with capabilities for editing reference features.

Alignments of mouse the Cx57 sequence to the human Cx59 and Cx62 sequences were done by using the Human-Mouse alignment browser with the "BLASTZ" algorithms.