Broad scale comparison also shows that the two strains differ in their response to the growth medium, with AltDE1 overexpressing many more genes in MMG than AltDE.
The wide range of methods used in sampling makes anything more than broad scale comparisons across the entire dataset difficult.
To allow a broad-scale comparison of growth dynamics across HCV epidemics we obtained approximate estimates of the basic reproductive number (R) for each HCV genotype using the relation R = 1+rD, where r is the population growth rate and D is the mean time of infectiousness [25].
Here we present results from the first broad-scale comparison of genome structure between an amphibian and other representative vertebrate taxa.
In summary, the broad-scale comparison of the three metagenome sequences identified that the three enrichment consortia metagenomes differ more based on taxonomy than they do based on the proportions of the metabolic pathways encoded.
Furthermore, a broader-scale comparison with other forests may be helpful.
Comparative and functional genomics is rapidly progressing from broad-scale comparisons among model systems to fine-scale analyses among populations and closely related species [ 43- 45].
In addition, most inselbergs maintain their typical attributes irrespective of geographic location, enabling broad-scale comparisons even between different and contrasting biomes, such as mesic forests and seasonally dry plant communities [ 2].
These broad-scale comparisons show us that cluster 1 is upregulated after heat stress (P < 0.01) compared with a random sample, while cluster 2 is downregulated after heat stress (P < 0.01; fig. 4).
However, the predictable patterns in elemental composition that we detected within proteomes were not plainly evident in broad-scale comparisons across species, indicating a potential role for lineage-specific evolutionary changes; this phylogenetic variation can provide a testing ground for future researchers wishing to use GRASP to look into the evolution of atomic composition.
Because this scale obscures the results obtained for the most highly induced genes (e.g. ZRT1, YOR387C), data for several genes are also plotted in Fig. 4B using a broader scale that allows for comparison of the expression levels across the full range of zinc conditions.
