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Broad-scale population structure is likely to affect the probability of landscape-scale disease transmission.
Our SNP set provided remarkable resolution in detecting broad-scale population structure and in estimating fine-scale relatedness.
Neutral variation distinguished lineages and defined broad-scale population structure consistent with previous studies, but fine-scale resolution was also detected at levels not previously observed.
Overall, broad-scale population genetic structure reflected drainage basin divisions with the clear differentiation of the MDB and HN, as well as the major catchments within these drainage basins.
To date most GWAS in plants have been composed of global samples that seek to maximize genetic and phenotypic variance, and identify causal associations while controlling for broad-scale population structure.
There is still much we do not know about longer term and broader spatial scale population processes at work in this system, but the studies we report can suggest hypotheses to test more explicitly.
In other words, location of the breeding areas may be important when explaining the genetic structure of populations at a broad scale, whereas geographical distance between populations is not.
This SARS model of the Haddon matrix views infectious disease as a form of injury affecting the population on a broad scale.
This tendency of genetic homogenization among stocked populations has also been observed in previous studies in several salmonids (e.g., brook charr: Marie et al. 2010; Lamaze et al. 2012; lake trout: Halbisen and Wilson 2009) and is due in all cases to the broad scale practice of using few source populations for broodstock.
If climatic fluctuations caused broad scale changes in vegetation and habitat, leading to population divergence, then the phylogeographical patterns of giraffes should also be found in other species.
This suggests that these populations are genetically distinct due to broad scale biogeographical factors associated with establishment and persistence of the organism.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com