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Going further, we investigated if those 17 TFs could be broad regulators of the TFs alone.
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GAS6 has been proposed as a broad regulator of the innate immune response.
Finally, we discovered that RNF121 acts as a broad regulator of NF-κB signaling since its silencing also dampens NF-κB activation following stimulation of Toll-Like Receptors (TLRs), Nod-Like Receptors (NLRs), RIG-I-Like Receptors (RLRs) or after DNA damages.
Finally, in cells exposed to the DNA-damaging agent etoposide, which relies on NEMO SUMOylation and phosphorylation to convey NF-κB activity [ 16], the transcription factor activation was reduced again, suggesting that RNF121 acts as a broad regulator of NF-κB signaling.
These data strongly suggest that SMG-1 is not a broad positive regulator of the insulin pathway.
Our approach is applicable to a broader range of regulators of interest for understanding the GRNs in which they operate.
In particular the Hsp90-interacting TPR proteins have received broad attention as proposed regulators of SR function [11], [13].
The first corresponded to a broad collection of positive regulators of cell proliferation.
The signaling pathways underlying recognition of PAMPs have been studied intensively and this has led to a broad understanding of key regulators of innate immunity based on studies of cell cultures and the use of knockout rodent mutants.
MicroRNAs (miRNAs) are a new class of endogenous regulators of a broad range of physiological processes, which act by regulating gene expression post-transcriptionally.
miRNAs are emerging as critical regulators of a broad range of developmental processes [1].
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com