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Slightly more than half of the transmembrane proteins can be grouped into broad functional categories based on sequence similarity to proteins with known function.
Transmembrane proteins were grouped into broad functional categories based on domains known to be involved in specific biochemical functions.
The cDNA-AFLP sequences identified were assigned to broad functional categories based on database similarity (Table 1 and additional file 1).
The differentially expressed cDNA sequences were assigned to broad functional categories based on similarity comparison to the Genbank Non-Redundant protein database using BLASTx.
We inspected the list of organ-specific DE transcripts and made a selection of the most interesting genes, which were grouped in five key broad functional categories based on GO term characterisation and on the current literature in the field.
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Hybrid resumes split the experience section into functional categories based on experience.
The DEGs in the hierarchical clustering were grouped into functional categories based on MIPS functional catalogue using Arabidopsis orthologues [ 55].
Differentially regulated genes identified by microarray were classified into functional categories based on COG designations.
The contigs were grouped into functional categories based on the FUNCAT system proposed by MIPS [ 33].
Identified genes were classified into functional categories based on clusters of orthologous genes (COG) designations.
Genes were divided into functional categories based on Comprehensive Microbial Resources (CMR) annotations.
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